Python-IHM documentation

This is a Python package to assist in handling mmCIF files compliant with the integrative/hybrid modeling (IHM) extension.

The documentation below documents the library API. For complete worked examples, see the examples directory at GitHub or real systems deposited using the library, such as Nup133.

Contents

• Introduction
• Usage
  • Datasets
  • System architecture
  • Restraints and sampling
  • Model coordinates
  • Metadata
  • Residue numbering
  • Output
  • Input
• Provenance
• Design principles
  • Lightweight
  • Mutable
  • Types rather than enums
  • Hierarchy of classes
  • Equal versus identical objects
  • mmCIF backend
• Low-level usage
• Change history
  • 1.0 - 2024-02-13
  • 0.43 - 2023-12-08
  • 0.42 - 2023-11-30
  • 0.41 - 2023-10-02
  • 0.40 - 2023-09-25
  • 0.39 - 2023-08-04
  • 0.38 - 2023-05-26
  • 0.37 - 2023-02-03
  • 0.36 - 2023-01-25
  • 0.35 - 2022-09-16
  • 0.34 - 2022-08-03
  • 0.33 - 2022-06-27
  • 0.32 - 2022-05-31
  • 0.31 - 2022-04-14
  • 0.30 - 2022-04-05
  • 0.29 - 2022-04-01
  • 0.28 - 2022-03-21
  • 0.27 - 2022-01-27
  • 0.26 - 2022-01-12
  • 0.25 - 2021-12-03
  • 0.24 - 2021-12-01
  • 0.23 - 2021-11-01
  • 0.22 - 2021-10-22
  • 0.21 - 2021-07-14
  • 0.20 - 2021-05-06
  • 0.19 - 2021-04-16
  • 0.18 - 2020-11-06
  • 0.17 - 2020-07-10
  • 0.16 - 2020-05-29
  • 0.15 - 2020-04-14
  • 0.14 - 2020-02-26
  • 0.13 - 2019-11-14
  • 0.12 - 2019-10-16
  • 0.11 - 2019-09-05
  • 0.10 - 2019-07-09
  • 0.9 - 2019-05-31
  • 0.8 - 2019-05-28
  • 0.7 - 2019-04-24
  • 0.6 - 2019-03-22
  • 0.5 - 2019-01-17
  • 0.4 - 2018-12-17
  • 0.3 - 2018-11-21
  • 0.2 - 2018-09-06
  • 0.1 - 2018-09-06

API Reference:

• The ihm Python module
• The ihm.source Python module
• The ihm.reference Python module
• The ihm.location Python module
• The ihm.dataset Python module
• The ihm.metadata Python module
• The ihm.startmodel Python module
• The ihm.representation Python module
• The ihm.geometry Python module
• The ihm.restraint Python module
• The ihm.cross_linkers Python module
• The ihm.citations Python module
• The ihm.protocol Python module
• The ihm.analysis Python module
• The ihm.model Python module
• The ihm.format Python module
• The ihm.format_bcif Python module
• The ihm.dumper Python module
• The ihm.reader Python module
• The ihm.dictionary Python module
• The ihm.flr Python module
• The ihm.multi_state_scheme Python module

Indices and tables

• Index

• Module Index

• Search Page