The ihm.citations Python module

Citations for some commonly-used software packages.

Each of these is an instance of the ihm.Citation class, and so can be used anywhere these objects are required, generally for ihm.Software.

ihm.citations.imp

The Integrative Modeling Platform (IMP).

ihm.citations.pmi

The PMI module of the Integrative Modeling Platform (IMP).

ihm.citations.modeller

MODELLER, comparative modeling by satisfaction of spatial restraints.

ihm.citations.psipred

PSIPRED, protein secondary structure prediction based on position-specific scoring matrices.

ihm.citations.disopred

DISOPRED, disordered region prediction.

ihm.citations.hhpred

HHpred, protein homology detection and structure prediction.

ihm.citations.relion

RELION, a Bayesian approach for cryo-EM structure determination.

ihm.citations.phyre2

Phyre2, a web portal for protein modeling, prediction and analysis.

ihm.citations.swiss_model

SWISS-MODEL: homology modeling of protein structures and complexes.

ihm.citations.alphafold2

AlphaFold: ab-initio modeling of protein structures.

ihm.citations.colabfold

ColabFold: accessible AlphaFold pipeline.

ihm.citations.qmeandisco

QMEANDisCo: model quality estimation with distance constraints.

ihm.citations.mmseqs2

MMseqs2: app for fast, interactive sequence searches.