The ihm.citations
Python module¶
Citations for some commonly-used software packages.
Each of these is an instance of the ihm.Citation
class,
and so can be used anywhere these objects are required, generally for
ihm.Software
.
- ihm.citations.imp¶
The Integrative Modeling Platform (IMP).
- ihm.citations.pmi¶
The PMI module of the Integrative Modeling Platform (IMP).
- ihm.citations.modeller¶
MODELLER, comparative modeling by satisfaction of spatial restraints.
- ihm.citations.psipred¶
PSIPRED, protein secondary structure prediction based on position-specific scoring matrices.
- ihm.citations.disopred¶
DISOPRED, disordered region prediction.
- ihm.citations.hhpred¶
HHpred, protein homology detection and structure prediction.
- ihm.citations.relion¶
RELION, a Bayesian approach for cryo-EM structure determination.
- ihm.citations.phyre2¶
Phyre2, a web portal for protein modeling, prediction and analysis.
- ihm.citations.swiss_model¶
SWISS-MODEL: homology modeling of protein structures and complexes.
- ihm.citations.alphafold2¶
AlphaFold: ab-initio modeling of protein structures.
- ihm.citations.colabfold¶
ColabFold: accessible AlphaFold pipeline.
- ihm.citations.qmeandisco¶
QMEANDisCo: model quality estimation with distance constraints.
- ihm.citations.mmseqs2¶
MMseqs2: app for fast, interactive sequence searches.